Comparative Genomics of Non-Model Invertebrates

Resources

All


Systematic errors in orthology inference and their effects on evolutionary analyses

Paschalis Natsidis, Paschalia Kapli, Philipp H. Schiffer, Maximilian J. Telford
YEAR: 2021
PUBLISHER/PLACE: Cell Press
JOURNAL: iScience
VOLUME/ISSUE: 24/2
PAGES: 102110

"Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult "

Morel B, Barbera P, Czech L, Bettisworth B, Hübner L, Lutteropp S, Serdari D, Kostaki E-G, Mamais I, Kozlov AM, Pavlidis P, Paraskevis D, Stamatakis A
YEAR: 2020
PUBLISHER/PLACE: Oxford University Press
JOURNAL: Molecular Biology and Evolution
PAGES: msaa314

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Baudry, L., Guiglielmoni, N., Marie-Nelly, H. et al.
YEAR: 2020
PUBLISHER/PLACE: BioMed Central
JOURNAL: Genome Biology
VOLUME/ISSUE: 21/1
PAGES: 148

Computer vision for pattern detection in chromosome contact maps

Matthey-Doret, C., Baudry, L., Breuer, A. et al.
YEAR: 2020
PUBLISHER/PLACE: Nature Publishing Group
JOURNAL: Nature Communications
VOLUME/ISSUE: 11/1
PAGES: 5795

Author Correction: Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida

Lozano-Fernandez, J., Tanner, A.R., Giacomelli, M. et al.
YEAR: 2019
PUBLISHER/PLACE: Nature Publishing Group
JOURNAL: Nature Communications
VOLUME/ISSUE: 10/1
PAGES: 4534

Streamlined Conversion of Omics Metadata into Manuscript Facilitates Publishing and Reuse of Omics Data

Dimitrova M, Meyer R, Buttigieg PL, Georgiev T, Zhelezov G, Demirov S, Smith VS, Penev L
YEAR: 2020
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 4
PAGES: e59041

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Rispe, C., Legeai, F., Nabity, P.D. et al.
YEAR: 2020
PUBLISHER/PLACE: BioMed Central
JOURNAL: BMC Biology
VOLUME/ISSUE: 18/1
PAGES: 90

The complete mitogenome of Arion vulgaris Moquin-Tandon, 1855 (Gastropoda: Stylommatophora): mitochondrial genome architecture, evolution and phylogenetic considerations within Stylommatophora

Doğan Ö, Schrödl M, Chen Z.
YEAR: 2020
PUBLISHER/PLACE: PeerJ
JOURNAL: PeerJ
VOLUME/ISSUE: 8
PAGES: e8603

Computational discovery of hidden breaks in 28S ribosomal RNAs across eukaryotes and consequences for RNA Integrity Numbers

Natsidis, P., Schiffer, P.H., Salvador-Martínez, I. et al.
YEAR: 2019
PLACE: UK
PUBLISHER/PLACE: Nature Publishing Group
JOURNAL: Scientific Reports
VOLUME/ISSUE: 9/1
PAGES: 19477

Comparative genomics and the nature of placozoan species

Michael Eitel, Warren R. Francis, Frédérique Varoqueaux, Jean Daraspe, Hans-Jürgen Osigus, Stefan Krebs, Sergio Vargas, Helmut Blum, Gray A. Williams, Bernd Schierwater, Gert Wörheide
YEAR: 2018
PLACE: San Francisco
PUBLISHER/PLACE: Public Library of Science
JOURNAL: PLOS Biology
VOLUME/ISSUE: 16/7
PAGES: e2005359

OpenBiodiv: Linking Type Materials, Institutions, Locations and Taxonomic Names Extracted From Scholarly Literature

Mariya Dimitrova, Viktor Senderov, Teodor Georgiev, Georgi Zhelezov, Lyubomir Penev
YEAR: 2019
PLACE: Bulgaria
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 3
PAGES: e35089

Mobilizing Data from Taxonomic Literature for an Iconic Species (Dinosauria, Theropoda, Tyrannosaurus rex)

Jeremy A. Miller, Yanell Braumuller, Puneet Kishor, David Peter Shorthouse, Mariya Dimitrova, Guido Sautter, Donat Agosti
YEAR: 2019
PLACE: Bulgaria
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 3
PAGES: e37078

The Pensoft Data Publishing Workflow: The FAIRway from articles to Linked Open Data

Lyubomir Penev, Teodor Georgiev, Viktor Senderov, Mariya Dimitrova, Pavel Stoev
YEAR: 2019
PLACE: Bulgaria
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 3
PAGES: e35902

Data Auditing, Cleaning and Quality Assurance Workflows from the Experience of a Scholarly Publisher

Lyubomir Penev, Teodor Georgiev, Mariya Dimitrova, Yasen Mutafchiev, Pavel Stoev, Robert Mesibov
YEAR: 2019
PLACE: Bulgaria
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 3
PAGES: e35019

OpenBiodiv-O Ontology: Bridging the Gap Between Biodiversity Data and Biodiversity Publishing

Mariya Dimitrova, Viktor Senderov, Kiril Simov, Teodor Georgiev, Lyubomir Penev
YEAR: 2019
PLACE: Bulgaria
PUBLISHER/PLACE: Pensoft Publishers
JOURNAL: Biodiversity Information Science and Standards
VOLUME/ISSUE: 3
PAGES: e35773

OpenBiodiv: A Knowledge Graph for Literature-Extracted Linked Open Data in Biodiversity Science

Lyubomir Penev, Mariya Dimitrova, Viktor Senderov, Georgi Zhelezov, Teodor Georgiev, Pavel Stoev, Kiril Simov
YEAR: 2019
PUBLISHER/PLACE: MDPI
JOURNAL: Publications
VOLUME/ISSUE: 7(2)
PAGES: 38

Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling

Jesus Lozano-Fernandez, Mattia Giacomelli, James F. Fleming, Albert Chen, Jakob Vinther, Philip Francis Thomsen, Henrik Glenner, Ferran Palero, David A. Legg, Thomas Iliffe, Davide Pisani, Jorgen Olsen
YEAR: 2019
PLACE: UK
PUBLISHER/PLACE: Oxford University Press
JOURNAL: Genome Biology and Evolution
VOLUME/ISSUE: 11/8
PAGES: 2055–2070

Increasing species sampling in chelicerate genomic-scale datasets provides support for monophyly of Acari and Arachnida

Jesus Lozano-Fernandez, Alastair R Tanner, Mattia Giacomelli, Robert Carton, Jakob Vinther, Gregory D Edgecombe, Davide Pisani
YEAR: 2019
PLACE: UK
PUBLISHER/PLACE: Nature Publishing Group
JOURNAL: Nature Communications
VOLUME/ISSUE: 10/1
PAGES: 2295

Please contact the author if you wish to reuse the image.

Ksenia Juravel